Blog / Comparison

Evernote Export: ENEX vs HTML vs Markdown

Choosing the wrong export format means extra work later - re-exporting, converting, or discovering your backup isn't actually usable. Here's how to pick the right format the first time.

December 27, 2025
10 min read
aluo.app Team

Why Choosing the Wrong Format Causes Extra Work

Most users export their Evernote notes without thinking much about format. They pick whatever seems obvious, complete the export, and move on. The problem surfaces later - sometimes months later - when they actually try to use those exported files.

Here are real scenarios that create extra work:

Scenario 1: ENEX for Archiving

You export to ENEX thinking it's the "official" format. Two years later, you want to find an old note. You can't just open the file - you need to import it into Evernote or another app first. If you've cancelled your Evernote subscription, you now need to find and install software just to read your own notes.

Scenario 2: HTML for Obsidian Migration

You export to HTML because it's "readable." Then you decide to move to Obsidian. Now you need to convert thousands of HTML files to Markdown - a process that often loses formatting, breaks links, and requires manual cleanup.

Scenario 3: Markdown Without Preservation

You export to Markdown for Obsidian. It works great - until you realize complex tables, embedded PDFs, and certain formatting didn't survive the conversion. Some notes are now incomplete, and you've already deleted them from Evernote.

The right format depends entirely on what you plan to do with the exported files. There's no universally "best" format - only the best format for your specific use case.

ENEX: Strengths and Limitations

ENEX (Evernote Export) is Evernote's native export format. It's an XML-based format that contains your notes, metadata, and attachments in a single file.

What ENEX Does Well

  • Complete data preservation: Everything Evernote stores is captured - note content, creation dates, modification dates, tags, location data, source URLs, and all attachments
  • Wide import support: Many note-taking apps can import ENEX files - Notion, Joplin, Apple Notes, OneNote (with converter), and others
  • Lossless roundtrip: Export from Evernote, import back to Evernote - nothing is lost
  • Single file per notebook: Easy to organize and transfer

ENEX Limitations

  • Not human-readable: Opening an ENEX file shows raw XML with base64-encoded attachments
  • Requires software to view: You can't browse notes without importing into an app
  • Large file sizes: A notebook with many attachments creates a multi-gigabyte file
  • Import quality varies: Different apps interpret ENEX differently, leading to formatting inconsistencies
  • Long-term risk: If ENEX-compatible apps disappear, accessing your notes becomes difficult

ENEX File Structure

<?xml version="1.0" encoding="UTF-8"?>
<en-export export-date="20251227T120000Z" application="Evernote">
  <note>
    <title>Meeting Notes - Q4 Planning</title>
    <created>20251215T090000Z</created>
    <updated>20251220T143000Z</updated>
    <tag>work</tag>
    <tag>meetings</tag>
    <content>
      <![CDATA[<?xml version="1.0" encoding="UTF-8"?>
        <en-note><div>Discussion points...</div></en-note>]]>
    </content>
    <resource>
      <data encoding="base64">iVBORw0KGgoAAAANSUhEUgAA...</data>
      <mime>image/png</mime>
    </resource>
  </note>
</en-export>

Best use cases for ENEX:

  • - Migrating to another note app (Notion, Joplin, Apple Notes)
  • - Creating a complete archive for potential future import
  • - Transferring notes between Evernote accounts

HTML: Best Choice for Reading and Archiving

HTML export creates individual web pages for each note. These files can be opened in any web browser and display your notes exactly as they appeared in Evernote.

What HTML Does Well

  • Universal readability: Every computer has a web browser. No special software needed
  • Perfect formatting preservation: HTML can represent everything Evernote stores - tables, colors, fonts, embedded images
  • Offline access: Open files directly from your hard drive, no internet required
  • Future-proof: HTML has existed since 1991 and will remain readable for decades
  • Searchable: Operating system search can index HTML file contents
  • Index page option: Good exports include a searchable index of all notes

HTML Limitations

  • Not easily editable: Editing HTML requires technical knowledge or conversion
  • Hard to import elsewhere: Few note apps accept HTML imports
  • Many individual files: 5,000 notes = 5,000 files plus attachments
  • No built-in sync: Static files, no cloud sync capability

Well-Structured HTML Export

evernote-html-export/
├── index.html              # Searchable index of all notes
├── style.css               # Consistent styling
├── Work/
│   ├── Meeting Notes.html
│   ├── Project Plan.html
│   └── attachments/
│       ├── screenshot.png
│       └── budget.xlsx
├── Personal/
│   ├── Recipe Collection.html
│   └── Travel Ideas.html
└── Archive/
    └── Old Projects.html

Best use cases for HTML:

  • - Long-term archiving where future readability matters
  • - Creating a browsable offline knowledge base
  • - Sharing notes with people who don't use Evernote
  • - Insurance backup alongside other formats

Markdown: Ideal for Migration and Knowledge Bases

Markdown export creates plain text files with simple formatting syntax. It's the native format for apps like Obsidian, Logseq, Notion, and many others.

What Markdown Does Well

  • Plain text durability: Markdown files are just text - they'll be readable forever
  • Perfect for Obsidian: Drop Markdown files into Obsidian and everything works
  • Easy to edit: Any text editor can modify Markdown files
  • Version control friendly: Works great with Git for tracking changes
  • Lightweight: Small file sizes, fast to process
  • Wide compatibility: Works with Obsidian, Logseq, Notion, Bear, iA Writer, and more

Markdown Limitations

  • Formatting loss: Complex tables, colors, and fonts don't survive conversion
  • Embedded content issues: PDFs and some attachments need special handling
  • Inconsistent conversion: Different tools produce different results
  • Checkbox syntax varies: Evernote checkboxes may not convert correctly

Markdown Conversion Example

Evernote Note

Meeting Notes

Discussion points:

  • Budget review
  • Timeline update

[Image: screenshot.png]

Markdown Output

# Meeting Notes

Discussion points:

- Budget review
- Timeline update

![screenshot](attachments/screenshot.png)

Conversion quality matters: A poor Markdown conversion can mangle your notes. Always spot-check complex notes after conversion, especially those with tables, code blocks, or heavy formatting.

Best use cases for Markdown:

  • - Migrating to Obsidian, Logseq, or other Markdown apps
  • - Building a personal knowledge base you'll continue editing
  • - Notes that are primarily text without complex formatting
  • - Developers who want version control integration

Common Mistakes Users Make

Understanding these common errors helps you avoid repeating them.

Mistake 1: Choosing Based on File Size

Some users pick Markdown because the files are smaller. But smaller files often mean lost data. The question isn't "which format is smallest?" - it's "which format preserves what I need?"

Mistake 2: Exporting Once and Deleting Source

Users export their notes, confirm files exist, then delete everything from Evernote to save money on subscriptions. Months later, they discover the export is incomplete or corrupted. Always verify exports thoroughly before deleting the source.

Mistake 3: Assuming One Format Fits All

Different notes have different needs. Your recipe collection (simple text) has different requirements than your work project notes (complex tables, attached documents). A single export format may not serve all purposes.

Mistake 4: Ignoring Attachments

Users focus on note content and overlook attachments. In many accounts, attachments represent 90%+ of the data. An export that drops or corrupts attachments has lost most of your information.

Mistake 5: Not Testing the Export

Exporting is not the same as verifying. Users should open exported files, check that formatting survived, confirm attachments are present, and test the import process if migrating to another app. An untested backup is an unreliable backup.

Export Verification Checklist

  • Note count matches source
  • All notebooks are present
  • Complex notes display correctly
  • Images and attachments open
  • Tables render properly
  • Tags and metadata preserved

A Safer Multi-Format Export Strategy

Given that each format has strengths and weaknesses, many users adopt a multi-format strategy. This provides flexibility and covers different future scenarios.

The Three-Format Approach

Keep exports in multiple formats, each serving a different purpose:

1

ENEX: Your Migration Insurance

Keep one ENEX export as your complete, unaltered archive. If you ever need to import into a new app, this is your source of truth. Don't modify it - just keep it safe.

2

HTML: Your Readable Archive

Keep an HTML export for browsing and reference. This is what you open when you need to find old information. The index page makes searching easy, and any browser can display the notes.

3

Markdown: Your Working Copy (Optional)

If you're migrating to Obsidian or another Markdown app, export to Markdown for daily use. This becomes your active, editable knowledge base. ENEX stays as backup.

Storage Considerations

Yes, this means storing your notes multiple times. But storage is cheap compared to the value of your data. A 10 GB Evernote account might expand to 30-40 GB across three formats - still manageable on any modern drive or cloud storage plan.

Practical tip: Store your ENEX archive somewhere safe and rarely accessed (external drive, cloud backup). Keep HTML on your main computer for quick reference. Use Markdown as your daily driver if you've switched apps.

Comparison Summary and Final Thoughts

Here's a complete comparison of all three formats to help you decide:

Feature ENEX HTML Markdown
Human readable No Yes Yes
Formatting preserved 100% 100% 70-90%
Easy to edit No Difficult Yes
App import support Excellent Poor Good
Long-term archival Medium Excellent Excellent
Software required Note app Any browser Any text editor
Metadata preserved All Most Some
File size Large Medium-Large Small
Best for Obsidian No No Yes
Best for Notion Yes No Partial
Best for browsing No Yes Partial

Quick Decision Guide

Choose ENEX if...

  • - Migrating to Notion, Joplin, or Apple Notes
  • - You want a complete, lossless archive
  • - You might return to Evernote

Choose HTML if...

  • - You want to browse notes offline
  • - Long-term readability matters most
  • - Notes have complex formatting

Choose Markdown if...

  • - Migrating to Obsidian or Logseq
  • - You want to continue editing notes
  • - Notes are mostly text-based

Final Thoughts

There's no single "best" format - only the best format for your specific needs. The key is to think about what you'll actually do with the exported files before you export.

For most users, a combination approach works best: ENEX for complete preservation, HTML for everyday reference, and Markdown if you're actively migrating to a Markdown-based app.

Whatever you choose, remember to verify your exports before relying on them. An untested backup is barely better than no backup at all.

Related Articles